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Genetic patterns & public health implications of sickle cell anaemia across populations: A systematic review
For correspondence: Dr Manisha Shrivastava, Department of Transfusion Medicine, Bhopal Memorial Hospital and Research Centre, Bhopal 462 038, Madhya Pradesh, Indiae-mail: manishasdr@gmail.com
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Received: ,
Accepted: ,
Abstract
Background & objectives
Sickle cell anaemia (SCA) is a serious inherited blood disorder caused by mutations in the β-globin gene, leading to abnormal haemoglobin (HbS). Understanding the genetic diversity of SCA is important for improving diagnosis, treatment, and public health planning. Our aim was to systematically review and summarise the genetic variations associated with SCA in various populations, and to explore how these differences affect clinical outcomes and inform public health responses.
Methods
A systematic search was conducted across databases, including PubMed, Scopus, Cochrane, and Science Direct, for studies published between 1990 and 2025. A total of 62 studies were included, covering populations with a high prevalence of haemoglobinopathies.
Results
Significant genetic heterogeneity was identified. Common coinherited conditions included α- and β-thalassaemia, particularly in Saudi Arabia, Iran, and Sub-Saharan Africa, influencing haemoglobin levels and disease severity. Specific βS haplotypes (e.g. Benin, Bantu, Senegal) were regionally dominant, with some (e.g. Senegal) linked to higher foetal haemoglobin levels and milder symptoms. Genetic modifiers such as BCL11A and MYH9 variants were also found to affect disease expression. Public health screening programmes in countries like the UAE and India have achieved high coverage, but diagnostic and treatment challenges persist due to ongoing genetic and environmental variation. The Quantitative findings include regional dominance of βS haplotypes: Benin (29%), Bantu (3%), Senegal (1%), with the Senegal haplotype linked to higher foetal haemoglobin (HbF) levels (average 14.6%) and the Arab Indian haplotype (6.7%). Co-inheritance of β-thalassaemia was notably common in Saudi Arabia, Iran, and Sub-Saharan Africa.
Interpretations & conclusions
Tailored, genomically informed public health strategies are needed to address the diverse genetic landscape of SCA. Clinicians should incorporate genetic profiling and culturally appropriate counselling to improve care in affected populations. Variability in study design, sample size, and genetic reporting limited the ability to perform direct comparisons across regions.
Keywords
Genetic screening
hemoglobinopathies
public health implications
sickle cell disease
tribal population
Sickle cell anaemia (SCA) is an autosomal recessive hereditary blood disorder caused by a single point mutation in the β-globin gene (HBB) on chromosome 11, resulting in the formation of haemoglobin S (HbS) instead of normal haemoglobin, which leads to sickling of red blood cells, causing complications due to vaso-occlusion and increased mortality1.The disease is predominant in communities of African, Mediterranean, Middle Eastern, and Indian origin2.Limited healthcare access leads to exclusion from genomic research3,4. Many possess distinct genetic ancestries due to their unique migratory histories, potentially giving rise to novel or less-studied haemoglobin variants and genetic heterogeneity2,5,6. Current screening and public health strategies are typically based on data from well-researched populations, which may not apply to genetically diverse indigenous groups4,7. Variants such as HbS, HbC, and co-inheritance with thalassaemia, along with genetic modifiers like BCL11A (B-cell lymphoma/leukaemia 11A) and MYH9 (myosin heavy chain 9), contribute to variations in disease severity and outcomes1,3,8.
This systematic review aims to synthesise existing evidence on the prevalence, genetic variability, diagnostic accuracy of screening techniques, and their relevance for genetic counselling and public health planning and health implications of sickle cell anaemia (SCA) among Indigenous populations worldwide, so as to generate evidence-based insights for reducing the burden of disease. The specific objectives of the review are to (a) assess the prevalence and geographical distribution of SCA-related genetic mutations in Indigenous populations; (b) evaluate genetic variations in the HBB gene and compare these patterns with those observed in non-Indigenous groups; (c) explore the implications of genetic diversity for genetic counselling and targeted public health interventions; and (d) provide recommendations to improve SCA surveillance, early diagnosis, and management strategies tailored to the needs of Indigenous communities.
Materials & Methods
This systematic review was conducted in accordance with the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines, and the protocol was prospectively registered with PROSPERO (registration number: CRD420251028364)9.The review, being a secondary analysis of published data, adhered to the ethical standards of the Helsinki Declaration (2013 revision) and complied with the ICMR’s Ethical Guidelines for Biomedical Research on Human Participants (2017) where relevant.
Study design, duration and setting
A systematic review design, guided by the PICO framework with Population (P): individuals with sickle cell anaemia (SCA), Intervention/Exposure (I): genetic screening and molecular analysis, Comparison (C): prevalence across different populations, Outcomes (O): prevalence, genetic diversity, and clinical implications is adopted.
Eligibility criteria
Studies from database inception to March 2025 were included based on the PICOT (population, intervention, comparator, outcome, time) framework. Eligible studies comprised observational studies (e.g., cross-sectional, cohort,) and genetic surveys involving indigenous populations, specifically reporting on the prevalence of sickle cell anaemia (SCA), allele and genotype frequencies of the HBB gene or related haemoglobin variants, as well as public health outcomes such as disease burden, screening uptake, and genetic counselling efficacy, reporting on prevalence, allele/genotype frequencies, or public health outcomes related to SCA.
Studies not published in English, lacking genetic data, case reports, editorials, letters, reviews, or animal studies were excluded. Studies lacking such components were deemed to have insufficient public health relevance for inclusion. A detailed summary of inclusion and exclusion criteria is presented in supplementary Tables I and II. Public health relevance was assessed based on the study’s reporting of one or more of the following indicators: population-level prevalence or burden of SCA; uptake or accessibility of screening programs; availability and effectiveness of genetic counselling services; documented health disparities in SCA-related outcomes; or implications for public health interventions or policies.
Information sources and search strategy
A comprehensive search was conducted across the following databases: PubMed, Scopus, ScienceDirect, and Cochrane. Search terms included combinations of relevant keywords and Medical Subject Headings (MeSH) such as “sickle cell anaemia”, “genetic screening”, “HBB mutations”, and “Indigenous populations”. Boolean operators (AND, OR) were used to optimize results. Since inception to analysis “[All Fields])) AND (1000/1/1:2025/3/12[pdat]). Grey literature, government reports, and reference lists of included articles were manually screened for additional eligible studies. The full search strategy is available in supplementary table III.
Screening and study selection
Search results were imported into EndNote™ reference management software, and duplicates were removed. Two independent reviewers (RB and NS) screened the titles and abstracts. Full texts of potentially eligible articles were assessed against the criteria. Disagreements were resolved through discussion with two senior reviewers (MS and AA), who also contributed to the final selection consensus. List of excluded studies with reasons are provided in supplementary table IV.
Data extraction
Data were independently extracted by two reviewers (RB and NS) using a pre-designed standardised form. Extracted variables included: study characteristics: author, publication year, country, population studied, sample size, and study design; Genetic outcomes: allele frequencies (HbS, HbC), genotype distribution (HbSS, HbAS, HbAC), diagnostic techniques; and Public health outcomes: morbidity/mortality rates, access to healthcare, screening initiatives, and policy implications. Cross-checks were performed for accuracy. Authors were contacted for clarification when required. Discrepancies were resolved by consensus with support from a third and fourth reviewer (MS and AA).
Quality assessment and risk of bias
The quality of included studies was evaluated using the Joanna Briggs Institute (JBI) critical appraisal tools, selected according to study design (Supplementary Table V). Tools used included JBI checklists for: cross-sectional studies, cohort studies, case-control studies, studies reporting prevalence data, and genetic association studies. Each study was evaluated against a series of criteria. Appraisals were independently conducted by RB and NS. Disagreements were resolved through consensus or by involving a third reviewer MS. Studies were categorized as: high quality (low risk of bias): if they fulfilled most or all criteria; moderate quality: if they met most criteria but had minor limitations or unclear aspects imitations; Low quality (high risk of bias): if they had significant methodological flaws supplementary table VI.
Data synthesis and statistical analysis
Due to heterogeneity in study designs, populations, and outcomes, meta-analysis was not performed. Instead, a descriptive synthesis of data was undertaken. Prevalence rates, allele frequencies, and genotype distributions were summarized by geographical region, population ancestry, and study setting (e.g., neonatal vs. adult cohorts). Special attention was paid to variations in HBB mutations, β-thalassaemia alleles, and haplotype distributions. These genetic findings were interpreted in light of public health relevance, including disparities in care, screening coverage, and implications for future genetic counselling and policy initiatives.
Results
The study selection process is summarized in figure 1, in accordance with the PRISMA flow diagram. Characteristics of the included studies are summarised in table I10-71 .Overall, the evidence base was dominated by high-quality cross-sectional designs, while longitudinal and retrospective approaches were less represented, highlighting a reliance on descriptive methodologies within the available literature. The wide array of mutations and regulatory SNPs in sickle cell disease (SCD) directly influence clinical severity, organ complications, and therapeutic response. Understanding these variants—especially compound heterozygosity and HbF-modulating loci—is crucial for accurate diagnosis, prognosis, and personalised care strategies.

- PRISMA flow diagram.
| Study authors (yr) | Country | Type of study | Study population | sample size | Inclusion criteria | Gender | Geographical regions | Genetic markers | Key findings |
|---|---|---|---|---|---|---|---|---|---|
| Chou1⁰, 2009 | Global | (RH Locus Study) Genetic Diversity Analysis | SCD patients & general population | Not specified | Adult | Both male and female | Diverse populations | RHD & RHCE alleles | Over 120 RHD and 60 RHCE alleles identified; crucial for transfusion compatibility in SCD. |
| Pereira Mdel11, 2009 | Spain | Epidemiological prevalence study | Residents across 19 regions | Not specified | Adults | Not specified | African immigrants, autochthonous individuals | Variant haemoglobins (HbS) | SCD prevalence has tripled in 4 years; universal neonatal screening is recommended in high-risk regions. |
| Dash12, 2018 | India | Genetic association study | HbS-β-thalassemia patients | 62 | Not specified | Not specified | Not Specified | Globin haplotypes, α-thalassemia | Elevated HbF has a protective role in reducing the frequency of painful episodes in sickle cell disease. |
| Colah13, 2005 | India | Neonatal Screening | Cou-ples at risk | 85 | Adult | Both | Tribal group | Not specified | PND identified 23.5% affected foetuses; all opted for termination, raising ethical dilemmas given the milder disease course in some tribal groups. |
| Ayatollahi1⁴, 2005 | Not speci-fied | Observational, Molecular Genetics Study | Sus-pec-ted sick-le cell dis-ease pa-tients and nor-mal con-trols | 104 (52 normal, 52 pa-tients) | Adult | Both male & female | Not specified | β-globin gene mutation (Codon 6, Glu → Val) | PCR-based assay successfully detected sickle cell disease (Hb SS, n=15) and carriers (Hb AS, n=37). Normal individuals (Hb AA) confirmed. The method is rapid, sensitive, and useful for prenatal diagnosis. |
| Akhter1⁵, 2021 | Saudi Arabia | Observational, Molecular Genetics | Individuals with sickle cell trait from the premarital from the premarital screening clinic | 100 | Adult | Both male & female | predominantly Arab | βS haplotypes: Benin (29%), Bantu (3%), Senegal (1%), Atypical haplotypes (31%) | Atypical haplotypes were found in 31% of cases (29% heterozygous, 2% homozygous), suggesting genetic diversity affecting SCD severity in Jazan. Further studies are needed to correlate haplotypes with clinical outcomes. |
| Dixit1⁶, 2022 | India | Cross-sectional study | Particular Vulnerable Tribal groups (PVTGs) | 1461 | Adult | Both male and female | Tribal groups in Odisha | Sickle cell, β-thalassaemia, α-thalassaemia, G6PD deficiency | Prevalence: AS (3.4%), SS (0.1%), β-thal heterozygotes (0.3%), HbS/β-thal (0.07%), HbS-α-thal (2.1%), G6PD deficiency (3.2%), malaria (8.1%). Arab-Indian haplotype found in all HbS cases. High frequency of G6PD Orissa (97.9%). 57.4% of G6PD-deficient individuals and 16% of AS were malaria positive. |
| Jinks1⁷, 1989 | USA | Genetic Screening Study | Newborns are screened for the Sickle Cell Disease | Not specified | Neonates | Not specified | Not specified | β-globin gene mutation (sickle cell mutation) | Developed a rapid and specific genotypic diagnosis method using DNA from dried blood spots, enabling early confirmation of sickle cell disease without requiring a liquid blood sample, improving efficiency and reducing follow-up costs. |
| Hassan1⁸, 2014 | Oman | Genetic Screening Study | Unrelated Omani cases with suspected hemoglobinopathies | 297 | Adult | Both | Omani | HBB gene mutations | Ion Torrent PGM sequencing effectively and rapidly identified HBB mutations, proving to be a cost-efficient and scalable alternative to Sanger sequencing for hemoglobinopathy diagnosis. |
| Abuamer1⁹, 2017 | Bahrain | Observational, Cross-sectional | Adult SCD patients | 200 | Adult | Both male & female | Predominantly Middle Eastern/Arab | α-thalassemia (α3.⁷, α⁴.2, αᵀ-Saudia, αᴴᵖʰᵃ), β-thalassemia (β⁰) | One-third of SCD patients had α- or β-thalassemia. Sickle-thalassemia association increased Hb, Hct, and RBC count but reduced MCV and reticulocytes. Increased pain frequency in α-thalassemia (three-gene group); higher transfusion needs in β-thalassemia and females. |
| Al Hosani2⁰, 2013 | United Arab Emirates | National Neonatal Screening Program | Newborns screened for genetic/metabolic disorders | 750365 | Neonates | Both male & female | Predominantly Arab | Various genetic markers for 16 disorders | Screening saved 717 babies from morbidity/mortality. Incidence rates: 1:1,873 for congenital hypothyroidism, 1:2,384 for sickle-cell disease, 1:121 for sickle-cell trait. Coverage reached 95% in 2010. |
| Ben Mustapha21, 2012 | Tunisia | Molecular Genetics Study | Sickle cell disease individuals and controls | 124 β-globin chromosomes (49 βS carriers, 13 normal individuals) | Not specified | Both male and female | Tunisian | β-LCR-HS2 region, SNPs (rs7119428, rs9736333, rs60240093), and microsatellite (AT)XN12(AT)Y | Benin haplotype configuration (AT)8N12GT(AT)7 was strongly associated with βS chromosomes and higher Hb F (14.6%) levels, potentially modulating disease severity. The β-LCR-HS2 could serve as a genetic marker for Tunisian βS chromosomes and aid in molecular diagnosis. |
| Hariharan22, 2021 | India | Genetic Association Study | β-thalassemia homozygotes, Sickle Cell Anaemia patients, Healthy controls | 200 patients (100 β-thalassemia, 100 SCA) + 50 controls | Adult | Both | Indian | γ-Globin promoter (-158 C → T, +25 G → A), BCL11A (rs1427407 G → T), HBS1L-MYB (rs66650371, rs9399137 T → C) | Higher HbF levels are linked to milder disease, delayed transfusion need, potential for prognostic markers, and personalized therapy. |
| Marchetti23, 2023 | Italy | Retrospective cohort study (antenatal and preconception evaluation) | Couples referred for hemoglobinopathy risk evaluation | 351 couples | Median: 34 years | Mixed | Highly diverse (from 48+ countries; mainly Italy, Nigeria, Bangladesh, Ivory Coast) | β-thalassemia, HbS, HbC, α-gene triplication | 12% couples are at risk of severe hemoglobinopathies; 18% foetal thalassemia diagnoses, 9% SCD; α-triplication was found in 5.8% of tested individuals; the median gestational age was late (18 weeks), limiting reproductive options; this highlights the importance of timely screening and counselling. |
| Upadhye2⁴, 2016 | India | Genetic association study | Sickle cell anaemia patients, central India (Nagpur) | Not specified | Not specified | Not specified | Indian | SNPs in BCL11A & HBS1L-MYB genes influencing HbF and clinical severity | Specific SNPs in BCL11A and HBS1LMYB linked to higher HbF and milder clinical severity in central Indian SCA Patients |
| Khurana2⁵, 2011 | India (Gujarat) | Genetic Diversity and Hemoglobinopathy Study | Individuals from eight tribal groups | 431 | Not specified | Not specified | Tribes of Gujarat | Haptoglobin (Hp) locus, HbS (sickle cell) | The Hp2 allele was predominant in all tribes, similar to other Indian populations. Genetic differentiation (GST) was moderately high (5.6%). AMOVA showed genetic affinities between Gujarat tribes and Dravidian-speaking groups. High frequency (92.7%) of the Hp 0-0 phenotype among SS individuals suggests a selective advantage of HbAS in haemolytic disorders. |
| Mahmoud2⁶, 2022 | Mauritania | Molecular and epidemiological study | Patients with hemoglobinopathies | 40 | Adults | Both | Predominantly Heratin and Pular | HbS (HBB:c.20A>T), Cd44 -C, −29A>G, −α-3.7, IVS-II-849A>G, Cd24T>A, Hb Siirt, HbC; HbS haplotypes: Senegal, Benin, Arab-Indian, Bantu, and two atypical ones | nan |
| Borges2⁷, 2019 | Angola (Bengo region) | Prevalence and genetic study | Newborns | Not specified | Newborns | Both male and female | Not specified | Hb S, β-thalassemia (IVS I-110 (G>A), codon 39 (C>T)) | High HbS mutation prevalence (68.75%) with the Senegal haplotype most common (66.7%). Findings support targeted prevention strategies, including screening, genetic counselling, and prenatal diagnosis in Mauritania. |
| el-Hazmi2⁸, 1999 | Saudi Arabia | Cohort Study | Sickle cell disease individuals and controls | 26 SCD and 19 Controls | Children | Both male and female | Yemeni | Sickle cell, α-thalassaemia, | α-thalassaemia occurs frequently in Yemeni SCD patients. |
| Svidnicki2⁹, 2017 | Brazil | Next-Generation Sequencing (NGS) Study | Patients with hereditary anemia | 43 | Not specified | Not specified | Not specified | 58 genes screened | SPTB, ANK1, SPTA1, SLC4A1, PKLR, CDAN1, G6PD, HFE, KIF23 |
| Colombatti3⁰, 2019 | Italy | Newborn Screening Study | Newborns | 5466 | Newborns | Both male and female | 65% Italians, 9% mixed couples, 26% immigrants | β-globin gene mutations (HbS) | High incidence of SCD and carriers detected. 15% of HbS carriers were Caucasian (Italian, Albanian). The feasibility of a multicentric screening program was demonstrated. Supports the need for universal NBS in Italy. |
| Nouraie31, 2010 | Multicenter (Region unspecified) | Genetic association study | Children and adolescents with Hb SS | 261 | Pediatric/adolescent | Male & Female | Predominantly African descent | G6PD202A,376G (G6PD A-) α-thalassemia deletions | Associations of G6PD and sickle cell anemia |
| Bean32, 2014 | United States | Observational, Genetic Confirmation Study | Adults self-reporting SCD and controls | 126 (51 self-reported SCD, 75 controls) | 40–69 years (median 53) | 29% male | Predominantly African American | β-globin gene sequencing | Only 5.9% of those self-reporting SCD actually had it; 62.7% had SCT, 5.9% had haemoglobin C trait, and 25.5% had neither. Those reporting no SCD were 100% accurate. Highlights the need for better public awareness and education about SCD. |
| Hassan33, 2003 | Iraq | Prevalence and genetic study | Adults | 1064 | Adult | Both | Iraqi | G6PD with other other hemoglobinopathies | 10% risk with beta thal or SCD |
| Papachatzopoulou3⁴, 2010 | Greece (Achaia, Ilia, Etoloakarnania) | Genetic mutation analysis | β-thalassemia (β-thal) & β-thal/sickle cell disease patients | 199 total (157 from three SW prefectures) | Adults | Both | Greek population | HBB gene mutations (codon 39 C>T, IVS-I-6 T>C, Hb S β6 Glu→Val) | Distinct distribution of mutations in Achaia and Ilia. Highlights the need for regional genetic screening and prenatal diagnosis |
| Silvy3⁵, 2011 | Comoros, Afro-Caribbean | Genotyping Study | Blood donors | Not specified | Adults | Both | Comorian, Afro-Caribbean | RHCEce, ces, (C)ces Type 1, DIII Type 5 ces, KEL6/*7 | 58.69% of Comorians and 41.23% of Afro-Caribbeans had RHCEce variant alleles. High prevalence of the ces allele and (C)ces Type 1. Identified new RHCEces(712) variant. |
| Uda3⁶, 2008 | Sardinia | Genome-wide association study (GWAS) | Sardinian individuals with β-thalassemia and sickle cell disease | 4,305 | Adults | Both | Sardinian | SNP rs11886868 in BCL11A gene | Strong association with elevated HbF level |
| Trent3⁷, 2000 | Australia | Genetic Study | Patients with β-thalassemia major & SCD | Not specified | Not specified | Not specified | Predominantly Mediterranean | HFE (C282Y, H63D, S65C) | Highlighting genetic, screening and diagnostic implications |
| Shook3⁸, 2021 | United States | Cohort Study | Newborns identified through NBS for presumed SCA | 44 | Newborns (median first clinic visit at 8 weeks) | Not specified | Not specified | HbS, gene-deletion hereditary persistence of foetalhaemoglobin (HbS/HPFH) | 12% of newborns presumed to have SCA had a different diagnosis; 7% had HbS/HPFH. Genetic testing ensured correct diagnoses, preventing unnecessary therapy. |
| Zhou3⁹, 2021 | Alberta, Canada | Retrospective analysis of newborn screening (NBS) | Newborns screened for SCD from April 2019 onward | 80,314 infants | Newborns (≤10 days for most, ≤21 days for transfused infants) | Not specified | Not specified | Beta-globin gene (HBB) | The study confirmed 34 SCD cases (1:2400 incidence) and 608 carriers (1:130 frequency). A screening algorithm enabled accurate detection, even in transfused infants. |
| Ashley-Koch⁴⁰, 2011 | Not specified (likely U.S./African descent cohort) | Observational, Genetic Association Study | Adult SCD patients screened for proteinuria | 521 | 18–83 years | Both male & female | Predominantly African American | MYH9 and APOL1 SNPs | MYH9 SNPs are more strongly associated with proteinuria than APOL1. A risk haplotype was linked to proteinuria. Glomerular filtration rate negatively correlated with proteinuria. Findings could help early identification of at-risk patients and guide new therapies. |
| Antoniadi⁴1, 2002 | Not specified (likely European cohort) | Observational, Molecular Genetics | Prenatal diagnosis cases for 8 monogenic disorders | 135 | Fetal samples | N/A | Predominantly Caucasian | Polymorphic loci: 3k-HVR/APO B, D1S80, THO1, VNTRI of vWf | Polymorphic loci: 3k-HVR/APO B, D1S80, THO1, VNTRI of vWf study |
| Dadheech⁴2, 2016 | India | Genetic Association Study | Patients with β-thalassaemia major and sickle cell anemia (SCA) | 620 (420 β-thalassaemia major, 200 SCA) | Adult | Both male and female | Not specified | SNP rs11886868 (T/C) in BCL11A gene | Severity of beta Thal with SCD |
| Azarkeivan⁴3, 2020 | Iran | Cross-sectional, Molecular Genetics Study | Patients with Hb S abnormality are referred to a thalassemia clinic | 47 | Adult | Both male & female | Predominantly Iranian | Hb S (HBB: c.20A>T), Hb S/β-thal, Hb S/Hb D-Punjab (HBB: c.364G>C), α3.⁷ deletion | Hb SS (44.7%), Hb S/β-thal (48.9%), and Hb S/Hb D-Punjab (6.4%) were identified. α-thal mutations are present in some cases. Coinheritance of sickle cell disease with α- and β-thalassemia is common. Pre-marriage screening is crucial for diagnosis and management. |
| Moorchung⁴⁴, 2013 | India | Diagnostic study | Patients with suspected hemoglobinopathies | 68 | Adult | Both | Not specified | β-globin gene mutations: IVS1/5, IVS1/1, codon 41/42, codon 8/9, del 22, codon 15, -619 bp deletion | HbS IVS1/5 mutation was the most common (38.23%). 100% concordance between HPLC and molecular testing for sickle cell trait. Molecular testing is crucial, especially where compound heterozygosity (e.g., HbS + β-thalassemia) may exist. |
| Munshi⁴⁵, 2009 | India | Diagnostic/molecular epidemiology | Suspected hemoglobinopathy patients | 1592 | Adult | Both | Indian population | β-globin gene mutations including IVS1-5(G–C), 619 bp deletion | Found 119 β-thalassemia major and 347 β-thalassemia trait cases; also detected sickle cell, HbD, HbE, and HPFH; IVS1-5 and 619 bp deletion were the most common mutations; essential for targeted prenatal diagnosis. |
| Patra⁴⁶, 2010 | Raipur, India | Large-scale population screening | Villagers in high-risk areas | 50 | Children and Adult | Not specified | Indian | Sickle cell gene | low hematological parameters with significant inverse corelation with HbA2 and HbF |
| Freire⁴⁷, 2024 | Cape Verde | Newborn screening & Hematological study | Newborns & SCA patients | 346 (newborns) | Newborns & diagnosed SCA patients | Both male and female | Not specified | HbS, HbF, Beta S-globin haplotypes | Positive impact of high HbF on reducing the severity of SCA |
| Dezan⁴⁸, 2017 | Not specified | Genetic Sequencing Study | Sickle cell disease (SCD) patients with unexplained Rh antibodies | 35 | Adult | Both male and female | Caucasian | RHD and RHCE genetic variants | NGS identified 10 RHD and 25 RHCE variant alleles. 62% of cases were misclassified by serology, with 73.1% of those posing transfusion risks. NGS improved transfusion compatibility. |
| Bzdok⁴⁹, 2024 | Germany | Genetic Newborn Screening (NBS) | Newborns | 1 million+ | Newborns | Both male and female | Not specified | SMA, SCID, SCD, β-thalassemia | 121 cases of SMA, 15 cases of SCID, and 77 cases of SCD or β-thalassemia were identified. The use of multiplex qPCR for screening was effective, with a detailed discussion on costs, turnaround times, and process optimization. The results provide a clearer picture of the prevalence of these diseases in Germany. |
| Wonkam⁵⁰, 2011 | Cameroon | Cross-sectional descriptive study | Pregnant women undergoing prenatal genetic diagnosis (PND) | 60 cases | Females | Female | Not specified | Sickle Cell Disease (HbS) & Chromosomal Anomalies (Trisomy 21, Trisomy 18) | The establishment of PND in Cameroon enabled genetic screening for SCD and chromosomal anomalies, revealing 6 SCD-affected foetuses and multiple trisomy cases. Advocacy and international collaboration were crucial for success. |
| Sahoo⁵1, 2014 | India (Odisha State) | HBB gene mutation study in a healthy population | Healthy individuals from urban Odisha | 267 | Adults | Both | Indian population | 63 different HBB mutations (11 new ones) identified | Carrier frequency of hemoglobinopathies: 18.48%. Carrier rate for β-thalassemia: 14.13%. Most frequent mutation: HBB:c.9T>C (19.57%). Findings support population screening programs & prenatal diagnosis to reduce disease burden. |
| Boemer⁵2, 2006 | Belgium | Neonatal screening feasibility study | Newborns from Belgian maternity units | 27010 | 5 days old | Both male and female | Not specified | Hb S, Hb C | Developed a cost-effective ELISA-based neonatal screening for sickle cell disease. Found 106 Hb S heterozygotes, 3 Hb C heterozygotes, 3 SS homozygotes (0.011%), and 17 false positives (0.063%). The test is cheap (€0.2/test) and feasible for widespread screening, especially in Central Africa. |
| Noizat-Pirenne⁵3, 2002 | France | Molecular/genetic study | SCD patients | 17 | Adults | Both | Afro-Caribbean Black individuals | RHCE alleles (ceEK, ceBI, ceAR), (C)ces haplotype, ces(748), ceMO | Identified multiple RHCE alleles linked to clinically significant antibodies (anti-RH18, RH34); found partial Rhe variants increasing risk of alloimmunization; emphasized the need for genotyping Black donors to ensure transfusion safety. |
| Gilman⁵⁴, 1988 | United States | Genetic &Hemoglobin Analysis | Sickle cell patient and family members | 8 | Adult | Both male and female | Not specified | Benin and Mor haplotypes, -202 (C→T) mutation | The Mor haplotype is associated with elevated HbF. The propositus (SCD patient) had 25% HbF and 68.4% HbA. AS relatives with the Mor haplotype had elevated HbF (2.5% ± 0.9%), while those with the Benin haplotype had normal HbF (0.5%). A unique -202 (C→T) mutation in the Aγ gene was identified, potentially contributing to increased HbF expression. |
| Krause⁵⁵, 2013 | South Africa | Retrospective file analysis (1983–2012) | Individuals tested for α-thalassemia, β-thalassemia, and sickle cell anemia | 1249 | Adults | Both | African, Indian, Mediterranean, Mixed | α-thal: -α3.⁷; β-thal: IVS1 nt5 (G>C), IVS1 nt110 (G>A) HbS | Comprehensive molecular genetics services exist for haemoglobinopathies in SA. Testing reflects ethnic prevalence: α-thal is mostly diagnostic; β-thal is in Indian/Mediterranean; HbS is in Africans. Screening and counsellingare recommended. |
| Lin⁵⁶, 2015 | USA | Genetic association study | SCD patients (adults and newborns) | 386 | Adults and newborns | Both | Not specified | SAR1A promoter SNPs: -809 C>T, -502 G>T, -385 C>A, rs2310991, rs4282891 | SAR1A promoter variants are associated with differences in HbF levels and response to hydroxycarbamide (HC); potential biomarkers for predicting HC response in SCD. |
| Meindert⁵⁷, 2019 | Europe/USA) | Case-control genetic association study | SCD patients | (cases = alloimmunized; controls = non-alloimmunized) 275 (130 controls, 145 cases) | Not specified | Not specified | Presumably of African descent | 690 SNPs including TLR1, TANK, MALT1, STAT4, IFNAR1 | No SNPs reached significance after multiple testing correction; 19 SNPs were moderately associated with alloimmunization. TLR1/TANK and MALT1 linked to increased risk; STAM/IFNAR1 and STAT4 linked to reduced risk. |
| Mbeti⁵⁸, 2024 | Cameroon | Observational genetic study | SCD patients and blood donors | 109 patients, 108 donors (total 217 individuals) | Not specified | Not specified | Sub-Saharan African | RHD and RHCE genes | Identified 24 RHD and 22 RHCE variant alleles; 66.3% of patients were at risk of alloimmunization due to exposure to variant RH antigens; highlights limitations of current serologic typing and calls for molecular-level screening in transfusion protocols. |
| Guvenc⁵⁹, 2012 | Turkey (Adana) | Retrospective Study | Hemoglobinopathy patients | 1130 | Adult | Both | Greece | IVS-I-110 | population screening and prenatal diagnosis significantly benefited by this data |
| Oner⁶⁰, 1992 | Multinational (various countries) | Genetic haplotype study | Sickle cell anemia (SS) patients, SC disease, S-β-thalassemia, HbS heterozygotes | 1,152 total (709 SS, 30 SC, 91 S-β-thal, 322 HbS heterozygotes) | Not specified | Not specified | African descent (likely) | βS haplotypes | Beta S gene arose separetly at different locations |
| Colah⁶1, 2011 | India | Prenatal Diagnosis Study | Pregnant women and affected families | 2221 pregnancies | Indian | Both male and female | Indian Beta Thalassemia | Sickle cell Disorders | The study emphasizes the need for more data on non-invasive prenatal diagnosis methods and the importance of micromapping to assess the true burden of these disorders in the country. |
| Harteveld⁶2, 2012 | Not specified | Not specified | Not specified | Not specified | Not specified | Both | Not specified | a new nonsickling beta7Glu>Val variant. | Consequences for basic diagnostics, screening, and risk assessment when dealing with HbS-like variants |
| Kumkhaek⁶3, 2008 | Not specified | Not specified | Not specified | Not specified | Not specified | Both | Not specified | sar1A | Fetal haemoglobin response to hydroxycarbamide treatment and sar1a promoter polymorphisms in sickle cell anaemia |
| Upadhye⁶⁴, 2016 | Genetic association study | Sickle cell anaemia patients, central India (Nagpur) | Not specified | Not specified | Not specified | Both | Indian | SNPs in BCL11A & HBS1L-MYB genes | influencing HbF and clinical severity |
| Tuzmen⁶⁵, 1996 | Turkey | Molecular Study Prospective | parents of Turkish descent and their fetuses | 70 | Adults | Both | Turkish | β-thalassemia, HbS mutations (ASO hybridization, PCR-based techniques) | Nan |
| Thaker⁶⁶, 2022 | India (Gujarat, Madhya Pradesh) | Newborn Screening & Follow-up Study | Newborns with Sickle Cell Disease (SCD) | 8,916 screened, 128 diagnosed, 87 followed | 0.5–6.6 years | Not specified | Tribal groups | HbSS, HbS-β thalassemia, α-thalassemia, Xmn1 polymorphism | 13.8% had severe/moderate SCD, while 86.2% had milder presentations. Hospitalization is required for 23 babies. Genetic counseling improved prenatal diagnosis acceptance. Mobile phones facilitated patient follow-up. Early diagnosis and prophylactic treatment are needed in rural areas. |
| Mohanty⁶⁷, 2015 | India | Multicentric cross-sectional study | Primitive tribal groups across India | 15140 | All ages | Both | Tribal groups across India | HbS, HbE, β-thalassemia variants | Found HbS allele frequency 1.1–12.0% and β-thal trait 0.5–2.4%; higher HbS in Dravidian and Indo-European tribes; tribal SCD linked to Arab Indian haplotype, with modifiers like HbF & α-thal reducing severity. |
| Keser⁶⁸, 2004 | Turkey (Antalya) | Genetic Screening Study | Mediterranean populations | 377 postnatal and 82 prenatal cases | Not specified | Not specified | Mediterranean population | Hb variants | One new Hb variant, Hb Antalya, and one new mutation, Cod 3 (+T), were found. HbS accounted for 10.3% of all mutations. |
| Hockham⁶⁹, 2018 | India | Spatial epidemiology | Individuals screened across India | 138486 | All ages | Both | scheduled population | HbS prevalence | This study mapped the geographic distribution of the sickle-cell β^S allele across India |
| Haj Khelil⁷⁰, 2004 | Tunesia | Not specified | Not specified | Not specified | Adult | Both | Tunisian | Clinical and molecular aspects of haemoglobinopathies in Tunisia | Complement the existing knowledge |
| Gupta⁷1, 1991 | India | Cross-sectional genetic survey | Gond tribal groups | 1228 | All ages | Both | Tribal group | HbS, α- and β-thalassemia variants | Illustrated the co-inheritance of alpha/beta-thalassaemia with β chain variants among tribal groups in Central India, impacting disease phenotype. |
Study designs and methodological profile of 62 included studies comprised a wide spectrum of research designs reflecting the multidisciplinary and evolving nature of genetic research in hemoglobinopathies. The majority of the studies (n=26; 41.9%) were observational cross-sectional studies, aimed at assessing the prevalence, distribution, or associations of specific haemoglobin variants and mutations within various populations. Molecular genetics studies (n=16; 25.80%) formed a significant portion of the reviewed literature, using techniques such as DNA sequencing, PCR-based assays, and mutation analysis to identify and characterise genetic markers linked to haemoglobinopathies. Neonatal screening and newborn screening studies (n=7; 10.4%) were also prominent, emphasizing the importance of early diagnosis and genetic counselling in preventing severe disease outcomes, done by HPLC. These studies employed a mix of biochemical and molecular methods to screen newborns for sickle cell disease and thalassemia traits. Additionally, genetic association studies (n=5; 8.06%) were used to explore the correlations between specific gene variants and disease phenotypes or severity. Other studies included prenatal diagnosis studies (n=3; 4.83%) that focused on early detection and management options for at-risk pregnancies.
A small number of studies (n=5; 8.06%) utilized feasibility or programme evaluation frameworks, especially in the context of implementing screening programmes in different populations.
Study participants/Study size and design
The included studies encompassed a diverse range of participants totalling millions of individuals across different life stages, geographic regions, and ethnic backgrounds, with the overarching focus on sickle cell disease (SCD), its variants, and related haemoglobinopathies. Sample sizes varied significantly, ranging from single case reports to population-level newborn screening initiatives involving over one million infants.
The studies included neonates, children, adolescents, adults, and prenatal (fetal) cases, with both sexes represented in nearly all cohorts. Ethnic and racial representation was broad: participants were predominantly of Middle Eastern, African, Indian, Mediterranean, and mixed ancestries, with notable subgroups such as Afro-Caribbean, tribal groups in India, and Sardinians.
While many studies centred on adult SCD patients or individuals undergoing genetic screening, others investigated sickle cell trait carriers, suspected haemoglobinopathy cases, or healthy controls for comparative analysis. The diversity of multiple study designs.
Regional representation in haemoglobinopathies
The 62 genetic studies included in this review originated from diverse locations, covering high-prevalence regions such as South Asia, the Middle East, and Sub-Saharan Africa, as well as populations of African descent in the Americas and Europe. India was the most frequently represented country, contributing studies from Gujarat, Madhya Pradesh, Odisha, and Chhattisgarh (Raipur)10,11,12,13.
Other South Asian countries included Iran14, Saudi Arabia15,16,Oman17, Iraq18, Bahrain19, and the United Arab Emirates20 highlighting the high burden of inherited haemoglobin disorders in this region.
African representation included studies from Tunisia21,22, Cameroon23,24, South Africa25, Mauritania26, Angola27, Cape Verde, and Comoros29, reflecting the continent’s genetic diversity in haemoglobinopathies. European countries such as Italy30 France31 Belgium32, Germany28, Netherlands33, Greece34 and Turkey35,36,37 contributed several studies, often focusing on native populations or migrant communities. Studies from the United States35,36,37 and Brazil38,39 addressed haemoglobinopathies among African-American and Afro-Brazilian populations, respectively. Additional studies were from Australia40 Canada (Alberta)37,41, and Sardinia42 Multinational or global studies were also included, with either unspecified or combined participant origins30,43-45. Some studies did not clearly mention participant origin but were inferred to involve European or African descent cohorts30,43-44,46-47.
The heat map showing the distribution of sickle cell haplotypes in different geographical areas (country-wise) is presented in figure 2.

- Haplotype distribution by country 1=Present, 0=Absent.
Participant characteristics, sample size, and heterogeneity
The reviewed studies demonstrate considerable heterogeneity in participant demographics, reflecting the diverse global burden of haemoglobinopathies. Sample sizes vary substantially, from single-patient case studies9,27 to nationwide screening programmes involving hundreds of thousands of neonates8,55,67. Participants’ ages ranged from newborns and foetuses to adults and elderly individuals, with many studies targeting adult sickle cell disease (SCD) or thalassemia patients48,19,40. Sex distribution was generally balanced, although a few studies focused exclusively on females49,50.
Ethnic backgrounds were diverse, including Middle Eastern6-8,22,29. South Asia17,19,21,22,39,40,45,47,51,52. African and Afro-Caribbean populations25,33,41,48,49,53. And European and Mediterranean cohorts4,10,18,21,25,29,38,46-48,54-58. Some studies specifically investigated tribal or indigenous groups21,32,51 enhancing the ethnic diversity across research efforts.
Genetic variants and molecular markers
A wide range of genetic markers were employed across the studies to investigate the molecular basis of sickle cell disease (SCD). Commonly analysed mutations included the HbS variant (HBB: c.20A>T), HbC, HbD-Punjab14,27,30,58, and β-thalassemia mutations such as IVS-I-110 (G>A), codon 39 (C>T), and various deletions, including 619 bp and 7.7 kb deletions27, 51,53,59. Deletions associated with α-thalassemia included -α3.⁷, -α⁴.2, and rare variants like αᴴᵖʰᵃ and αᵀ-Saudia19,55. Haplotype analysis of the β-globin gene cluster identified regional haplotypes like Benin, Senegal, Bantu, Arab Indian, and several atypical types26,58,60,61. Promoter region SNPs within BCL11A (e.g., rs11886868, rs1427407), γ-globin promoter variants (-158 C→T, +25 G→A), and HBS1L-MYB region markers (rs66650371, rs9399137) were examined due to their impact on foetal haemoglobin (HbF) levels and disease phenotype modulation22,37,47 while others targeted multiple point mutations using ASO hybridization or PCR-based methods52.
Additional markers of clinical relevance included MYH9 and APOL1 polymorphisms associated with kidney complications in SCD53 and G6PD mutations (202A, 376G) co-occurring with α-thalassemia41.. Other explored markers included SAR1A promoter variants56, TLR1, STAT4, and MALT1 SNPs57 and several studies also reported compound heterozygosity (e.g., HbS/β-thalassemia, HbS/HPFH) and gene deletion50,58 and rare haemoglobin variants such as HbE, HbD Los Angeles, and Hb Siirt24,26,52.
Haemoglobin C (Hb C) results from a β-globin gene mutation (β6 Glu→Lys) and is rare in the Middle East, usually occurring due to African admixture. While homozygous HbCC causes mild haemolytic anaemia, the HbSC combination with Hb S produces a milder but clinically significant sickle cell phenotype. Haemoglobin S-O (Arab) arises from the co-inheritance of Hb S (β6 Glu→Val) and Hb O-Arab (β121 Glu→Lys), and is more prevalent in parts of Saudi Arabia, Sudan, Egypt, and Jordan. Although Hb O-Arab alone causes minimal symptoms, its combination with Hb S leads to severe sickle cell disease, with anaemia, vaso-occlusive crises, and organ complications similar to HbSS. Both variants highlight the genetic diversity of sickle syndromes in the Middle East and the importance of premarital screening programmes62,63.
Discussion
This systematic review had 62 studies, mainly observational cross-sectional studies with a wide range of sample sizes, which included various diagnostic and screening tools and molecular methods, revealing that the genetic epidemiology of SCA could demonstrate the distribution of sickle cell haplotypes in various demographic and ethnic regions. This wide geographic representation underscores the importance of ethnically and regionally diverse genetic studies in understanding the complex inheritance patterns and variant distributions associated with haemoglobinopathies.
The availability of molecular diagnostic tools has further enhanced the ability to accurately identify SCA in diverse populations. Studies such as those by Hassan et al18 and Svinicki et al29 underscore the role of next-generation sequencing (NGS) in identifying genetic mutations associated with haemoglobinopathies, including novel mutations that may influence disease severity. By integrating advanced genetic diagnostics with public health strategies, such as genetic counselling and prenatal screening, healthcare providers can offer more precise management plans, reducing the incidence of severe complications in affected individuals.
In regions with limited access to healthcare, the introduction of neonatal screening (NBS) programs can significantly improve early diagnosis and intervention outcomes. Columbatti et al30 demonstrated the feasibility of implementing NBS programs in Italy, underscoring the importance of early detection in reducing disease-related morbidity and mortality. Pereira et al11 found that the prevalence of SCD tripled in a four-year period, highlighting the need for widespread screening programmes, particularly in high-risk populations49.
High-throughput genetic screening techniques and novel detection methods, including the use of dried blood spot DNA for early neonatal SCD diagnosis65 were shown to improve diagnostic efficiency. One study characterized distinct HBB mutations, including 11 novel ones underscoring the mutational heterogeneity of β-globinopathies49. In addition, large-scale analyses targeting up to 58 red cell–related genes (e.g., SPTB, ANK1, PKLR, CDAN1, HFE) reflected the complex genetic basis of hereditary anaemia syndromes overlapping with haemoglobinopathies. A recent study on neonatal screening by Thaker et al6 6demonstrated the feasibility of early diagnosis and highlighted the importance of mobile-based follow up and genetic counselling in remote tribal communities
Despite the significant contributions of the studies reviewed, there are limitations to be considered, like the exclusion of non-English studies, the inclusion of observational studies in nature, which inherently limit the ability to infer causality, and relatively small sample sizes in some studies. As highlighted by Bean et al38, biases in study design, such as non-randomized sampling or selection bias, are common in observational studies and can impact the accuracy of conclusions drawn about the genetic factors associated with SCA. Another limitation is the small sample size in some studies. This can lead to imprecise estimates of the prevalence of genetic mutations or disease severity. Azarkeivan58 noted that certain studies failed to account for population heterogeneity, which may result in skewed estimates of disease burden and genetic diversity in the population. Moreover, Harteveld35 raised concerns about the underreporting of certain genetic variants in SCA patients, particularly in underrepresented populations. This underreporting is likely due to a lack of comprehensive genetic screening in many low-resource settings, where the availability of genetic testing is limited. The need for more inclusive genetic databases and the standardization of diagnostic methods are critical to overcoming these gaps in knowledge. However, the strength of this review is the inclusion of observational studies examining various populations, revealing crucial insights into the genetic epidemiology of SCA, its public health burden, and the implications for genetic screening, counselling, and intervention strategies.
Given the high global burden of sickle cell anaemia, public health initiatives should prioritize improving access to diagnostic tools and expanding genetic counselling services, particularly in regions where SCA is prevalent. The development of national and regional screening programmes, such as those recommended by Chou10 and Borges27, could greatly enhance early diagnosis and intervention for individuals at risk. As noted by Thaker et al64, genetic counselling plays a crucial role in improving acceptance of prenatal diagnosis and guiding families in making informed decisions about reproductive choices that reduce the incidence of SCA in future generations. Collaboration between researchers from diverse geographic regions and ethnic backgrounds is essential for developing more comprehensive and representative data on the genetic epidemiology of sickle cell anaemia.
This review highlights the wide genetic variability in sickle cell disease and thalassaemia across global populations. Although these conditions share common molecular origins, their prevalence, clinical outcomes, and public health impact vary significantly by region and ethnicity. Recognising these differences is key to enhancing early detection, designing population-specific screening programmes, and implementing effective treatment approaches. These efforts support national and global goals, including the management of SCA and the promotion of equitable access to genetic healthcare for all communities. Finally, future research should focus on addressing the limitations of existing studies by conducting large-scale, multi-centre, randomized controlled trials to better understand the genetic mechanisms underlying SCA.
Financial support & sponsorship
None.
Conflicts of Interest
None.
Use of Artificial Intelligence (AI)-Assisted Technology for manuscript preparation
The authors confirm that there was no use of AI-assisted technology for assisting in the writing of the manuscript, and no images were manipulated using AI.
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